STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01368000Heavy metal-associated isoprenylated plant protein 47-like protein. (120 aa)    
Predicted Functional Partners:
CKAN_02433300
Alpha-1,3-glucosyltransferase; Belongs to the ALG6/ALG8 glucosyltransferase family.
   
 
  0.699
CKAN_00261500
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
   
  
 0.602
CKAN_00444300
Putative ribosome biogenesis protein RLP24.
   
   0.449
CKAN_00993800
rRNA-processing protein fcf2-like protein.
   
  
 0.449
CKAN_00941600
Ribosomal RNA processing protein 36.
   
    0.439
CKAN_01350300
rRNA-processing protein UTP23 isoform X1.
   
    0.428
CKAN_01212700
Ribosomal protein S4/S9.
   
    0.420
CKAN_02350900
Pumilio RNA-binding repeat.
   
    0.414
CKAN_02345700
Peter Pan-like protein isoform X1.
   
    0.412
CKAN_00570900
Brix domain-containing protein.
   
    0.410
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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