STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01448800Arsenical pump ATPase. (448 aa)    
Predicted Functional Partners:
CKAN_00748300
Golgi to ER traffic protein 4.
    
 0.931
CKAN_02494500
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
    
 0.859
CKAN_02657500
Protein-tyrosine phosphatase/arsenate reductase.
    
 0.858
CKAN_01009000
Citrate transporter-like domain-containing protein.
    
 0.848
CKAN_02161200
Large proline-rich protein bag6-B.
    
 0.749
CKAN_02019600
Large proline-rich protein BAG6-like protein isoform X2.
    
 0.749
CKAN_01748500
Adenosine 5' phosphosulfate reductase.
   
  0.742
CKAN_02375500
Adenosine 5' phosphosulfate reductase.
   
  0.742
CKAN_00729600
Syntaxin-31; Belongs to the syntaxin family.
   
 0.737
CKAN_00597800
Syntaxin-32-like protein; Belongs to the syntaxin family.
   
 0.737
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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