CKAN_01499100 protein (Cinnamomum micranthum)

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second shell of interactors

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filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Score

CKAN_01499100

Rotundifolia-like protein. (120 aa)

Predicted Functional Partners:

CKAN_01109200

0.432

CKAN_00958200

0.424

CKAN_00958300

0.424

CKAN_02340200

0.407

CKAN_02004600

0.406

CKAN_01103200

0.406

Your Current Organism:

Cinnamomum micranthum

NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CKAN_00958200	CKAN_01499100	A0A3S3MJ32	A0A443P5S9	Uncharacterized protein.	Rotundifolia-like protein.	0.424
CKAN_00958300	CKAN_01499100	A0A443NQZ9	A0A443P5S9	Uncharacterized protein.	Rotundifolia-like protein.	0.424
CKAN_01103200	CKAN_01499100	A0A443NUZ0	A0A443P5S9	Late embryogenesis abundant protein.	Rotundifolia-like protein.	0.406
CKAN_01109200	CKAN_01499100	A0A443NV57	A0A443P5S9	Putative phytosulfokines 6.	Rotundifolia-like protein.	0.432
CKAN_01499100	CKAN_00958200	A0A443P5S9	A0A3S3MJ32	Rotundifolia-like protein.	Uncharacterized protein.	0.424
CKAN_01499100	CKAN_00958300	A0A443P5S9	A0A443NQZ9	Rotundifolia-like protein.	Uncharacterized protein.	0.424
CKAN_01499100	CKAN_01103200	A0A443P5S9	A0A443NUZ0	Rotundifolia-like protein.	Late embryogenesis abundant protein.	0.406
CKAN_01499100	CKAN_01109200	A0A443P5S9	A0A443NV57	Rotundifolia-like protein.	Putative phytosulfokines 6.	0.432
CKAN_01499100	CKAN_02004600	A0A443P5S9	A0A3S3N9M2	Rotundifolia-like protein.	Exosome complex component RRP41 isoform X1.	0.406
CKAN_01499100	CKAN_02340200	A0A443P5S9	A0A443PTP2	Rotundifolia-like protein.	Lipase.	0.407
CKAN_02004600	CKAN_01499100	A0A3S3N9M2	A0A443P5S9	Exosome complex component RRP41 isoform X1.	Rotundifolia-like protein.	0.406
CKAN_02340200	CKAN_01499100	A0A443PTP2	A0A443P5S9	Lipase.	Rotundifolia-like protein.	0.407

Network Stats

number of nodes:

5

number of edges:

9

average node degree:

3.6

avg. local clustering coefficient:

0.9

expected number of edges:

4

PPI enrichment p-value:

0.0189

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0055086

Nucleobase-containing small molecule metabolic process

6 of 198

1.43

1.51

0.00010

GO:0009117

Nucleotide metabolic process

5 of 149

1.48

1.33

0.00063

GO:0072524

Pyridine-containing compound metabolic process

3 of 32

1.93

1.23

0.0038

GO:0019637

Organophosphate metabolic process

6 of 345

1.19

1.07

0.00063

GO:0009113

Purine nucleobase biosynthetic process

2 of 7

2.41

1.05

0.0116

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008177

Succinate dehydrogenase (ubiquinone) activity

2 of 3

2.78

0.99

0.0165

GO:0000166

Nucleotide binding

7 of 1050

0.78

0.5

0.0165

GO:0043167

Ion binding

9 of 2006

0.61

0.41

0.0165

GO:0003824

Catalytic activity

10 of 3415

0.42

0.29

0.0341

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005737

Cytoplasm

11 of 3920

0.4

0.28

0.0326

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:10713

De novo IMP biosynthetic process, and Tetrahydrofolate interconversion

3 of 15

2.25

1.74

0.00050

CL:10660

Nucleoside monophosphate metabolic process, and One carbon pool by folate

4 of 48

1.87

1.68

0.00034

CL:9614

Fumarate reductase complex, and 3Fe-4S

2 of 5

2.56

1.21

0.0061

CL:7135

Aldehyde biosynthetic process

2 of 6

2.48

1.21

0.0061

CL:10716

De novo IMP biosynthetic process

2 of 5

2.56

1.21

0.0061

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00230

Purine metabolism

4 of 102

1.55

1.39

0.00058

map00020

Citrate cycle (TCA cycle)

2 of 36

1.7

0.76

0.0315

map01110

Biosynthesis of secondary metabolites

5 of 652

0.84

0.49

0.0315

map01100

Metabolic pathways

8 of 2203

0.51

0.33

0.0315

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-196849

Metabolism of water-soluble vitamins and cofactors

4 of 84

1.63

1.38

0.00087

MAP-197264

Nicotinamide salvaging

2 of 5

2.56

1.23

0.0056

MAP-196854

Metabolism of vitamins and cofactors

4 of 112

1.51

1.2

0.0018

MAP-15869

Metabolism of nucleotides

3 of 69

1.59

0.94

0.0111

MAP-73817

Purine ribonucleoside monophosphate biosynthesis

2 of 13

2.14

0.93

0.0185

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF03853

YjeF-related protein N-terminus

2 of 2

2.95

1.22

0.0063

PF02769

AIR synthase related protein, C-terminal domain

2 of 2

2.95

1.22

0.0063

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036921

PurM-like, N-terminal domain superfamily

2 of 2

2.95

0.97

0.0181

IPR036676

PurM-like, C-terminal domain superfamily

2 of 2

2.95

0.97

0.0181

IPR036652

YjeF N-terminal domain superfamily

2 of 2

2.95

0.97

0.0181

IPR010918

PurM-like, C-terminal domain

2 of 2

2.95

0.97

0.0181

IPR004443

YjeF N-terminal domain

2 of 2

2.95

0.97

0.0181

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