STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01517400Exonuclease 1 isoform X1. (687 aa)    
Predicted Functional Partners:
CKAN_00878700
ATP-dependent DNA helicase RecQ-like protein.
  
 0.998
CKAN_01880500
DNA replication ATP-dependent helicase/nuclease DNA2.
   
 0.987
CKAN_02187200
DNA mismatch repair protein MLH1 isoform X2.
   
 0.986
CKAN_01437500
DNA mismatch repair protein MSH2; Component of the post-replicative DNA mismatch repair system (MMR).
   
 0.985
CKAN_00489700
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
 0.978
CKAN_01436800
DNA polymerase.
  
 0.978
CKAN_00601000
DNA mismatch repair protein MutS.
   
 0.973
CKAN_01326200
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
  
 0.973
CKAN_02076700
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
  
 0.973
CKAN_02543100
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
 0.973
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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