STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01536700Helix-turn-helix type 3. (269 aa)    
Predicted Functional Partners:
CKAN_00478100
Ribosomal protein S10.
   
 
 0.927
CKAN_00079000
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.913
CKAN_01282300
40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family.
   
   0.900
CKAN_01566800
60S ribosomal protein L37a-2.
  
   0.872
CKAN_02524900
60S ribosomal protein L27a-2; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.852
CKAN_02397200
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
 
 0.844
CKAN_02343700
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
 
 0.844
CKAN_01094100
UDP-N-acetylenolpyruvoylglucosamine reductase.
    
  0.839
CKAN_01089200
TATA-box-binding protein.
    
 
 0.830
CKAN_01846200
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
   0.830
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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