STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01591700Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (388 aa)    
Predicted Functional Partners:
CKAN_00363300
Protein Iojap-related, mitochondrial isoform X2.
  
 
 0.840
CKAN_01797600
Multisubstrate pseudouridine synthase 7 isoform X2.
    
 
 0.827
CKAN_00241700
tRNA/rRNA methyltransferase.
  
 
 0.817
CKAN_02118300
Short integuments 2, mitochondrial isoform X1.
   
 
 0.795
CKAN_01534900
Ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
  
   0.789
CKAN_01819600
50S ribosomal protein L21, mitochondrial-like protein isoform X1.
  
   0.774
CKAN_00317900
50S ribosomal protein L21, chloroplastic.
  
   0.774
CKAN_02414200
50S ribosomal protein L17, chloroplastic-like protein; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.773
CKAN_00767100
50S ribosomal protein L17, chloroplastic; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.773
CKAN_01809600
39S ribosomal protein L47, mitochondrial-like protein.
    
 
 0.773
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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