STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01598600Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (562 aa)    
Predicted Functional Partners:
CKAN_02158200
Protein LTV1.
   
 0.999
CKAN_01282300
40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family.
   
  0.996
CKAN_02681700
K Homology domain-containing protein.
   
 0.978
CKAN_02554200
K Homology domain-containing protein.
   
 0.978
CKAN_00327400
Nin one binding NOB1 Zn-ribbon-like protein.
   
 0.976
CKAN_00327200
Nin one binding NOB1 Zn-ribbon-like protein.
   
 0.976
CKAN_00320800
Nin one binding NOB1 Zn-ribbon-like protein; Belongs to the NOB1 family.
   
 0.976
CKAN_00319900
Nin one binding NOB1 Zn-ribbon-like protein.
   
 0.976
CKAN_00478100
Ribosomal protein S10.
   
 0.975
CKAN_00035100
Bystin.
   
 0.969
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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