STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01602800Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (936 aa)    
Predicted Functional Partners:
CKAN_02266600
Ribosomal protein L6; Belongs to the universal ribosomal protein uL6 family.
   
 
 0.788
CKAN_00695500
/SPRY domain-containing protein.
   
 0.782
CKAN_01534900
Ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.782
CKAN_01975000
37S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.775
CKAN_02501700
30S ribosomal protein S9, chloroplastic; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.775
CKAN_01667000
50S ribosomal protein L11, chloroplastic isoform X2; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.772
CKAN_00200400
Ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.772
CKAN_00478100
Ribosomal protein S10.
   
 
 0.767
CKAN_01819600
50S ribosomal protein L21, mitochondrial-like protein isoform X1.
   
 
 0.766
CKAN_00317900
50S ribosomal protein L21, chloroplastic.
   
 
 0.766
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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