STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01605200Plasmodesmata callose-binding protein 3. (192 aa)    
Predicted Functional Partners:
CKAN_00945800
DNA excision repair protein ERCC-1 isoform X1.
    
 0.646
CKAN_00982100
Polyubiquitin-like protein.
    
  0.573
CKAN_02268700
Polyubiquitin 3.
    
  0.573
CKAN_00982200
Ubiquitin, related.
    
  0.573
CKAN_00891500
Phosphatidylinositol 3-/4-kinase; Belongs to the PI3/PI4-kinase family.
    
  0.573
CKAN_01641800
Putative ubiquitin.
    
  0.573
CKAN_00890300
Protein SDE2.
    
  0.573
CKAN_02446700
Polyubiquitin 8.
    
  0.573
CKAN_02358600
Polyubiquitin 8.
    
  0.573
CKAN_00930400
Putative ubiquitin.
    
  0.573
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.