STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01617000Putative carotenoid cleavage dioxygenase 4, chloroplastic. (653 aa)    
Predicted Functional Partners:
CKAN_00846400
Zerumbone synthase.
     
 0.918
CKAN_01101500
Glucose/ribitol dehydrogenase.
     
 0.918
CKAN_01512500
Secoisolariciresinol dehydrogenase.
     
 0.846
CKAN_02289600
Secoisolariciresinol dehydrogenase isoform X2.
     
 0.846
CKAN_02400900
Secoisolariciresinol dehydrogenase isoform X1.
     
 0.846
CKAN_01407000
Lycopene cyclase-type.
     
 0.818
CKAN_01406700
Lycopene cyclase-type.
     
 0.818
CKAN_01407100
Capsanthin/capsorubin synthase, chromoplastic.
     
 0.818
CKAN_02675300
9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic.
  
  
 
0.758
CKAN_01050200
9-cis-epoxycarotenoid dioxygenase.
  
  
 
0.757
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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