Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CKAN_00367800 | CKAN_00448200 | A0A443N9V0 | A0A3S3NAZ6 | Replication protein A subunit B. | DNA repair endonuclease UVH1. | 0.918 |
CKAN_00367800 | CKAN_00448500 | A0A443N9V0 | A0A443NC47 | Replication protein A subunit B. | ERCC4 domain-containing protein. | 0.918 |
CKAN_00367800 | CKAN_00596000 | A0A443N9V0 | A0A3S3MPR0 | Replication protein A subunit B. | Tudor domain-containing protein 3. | 0.966 |
CKAN_00367800 | CKAN_00878700 | A0A443N9V0 | A0A443NNQ7 | Replication protein A subunit B. | ATP-dependent DNA helicase RecQ-like protein. | 0.985 |
CKAN_00367800 | CKAN_01579200 | A0A443N9V0 | A0A3S3PAV2 | Replication protein A subunit B. | ATP-dependent DNA helicase mph1 isoform X1. | 0.907 |
CKAN_00367800 | CKAN_01619500 | A0A443N9V0 | A0A443P8Z6 | Replication protein A subunit B. | Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. | 0.959 |
CKAN_00367800 | CKAN_01880500 | A0A443N9V0 | A0A3S3NZC8 | Replication protein A subunit B. | DNA replication ATP-dependent helicase/nuclease DNA2. | 0.949 |
CKAN_00367800 | CKAN_02092300 | A0A443N9V0 | A0A3S3MXD2 | Replication protein A subunit B. | Serine/threonine-protein kinase ATR isoform X1. | 0.959 |
CKAN_00448200 | CKAN_00367800 | A0A3S3NAZ6 | A0A443N9V0 | DNA repair endonuclease UVH1. | Replication protein A subunit B. | 0.918 |
CKAN_00448200 | CKAN_00596000 | A0A3S3NAZ6 | A0A3S3MPR0 | DNA repair endonuclease UVH1. | Tudor domain-containing protein 3. | 0.989 |
CKAN_00448200 | CKAN_00878700 | A0A3S3NAZ6 | A0A443NNQ7 | DNA repair endonuclease UVH1. | ATP-dependent DNA helicase RecQ-like protein. | 0.960 |
CKAN_00448200 | CKAN_01209300 | A0A3S3NAZ6 | A0A3S3MVQ9 | DNA repair endonuclease UVH1. | Replication protein A subunit A. | 0.918 |
CKAN_00448200 | CKAN_01209400 | A0A3S3NAZ6 | A0A443NXX0 | DNA repair endonuclease UVH1. | Replication protein A subunit A. | 0.918 |
CKAN_00448200 | CKAN_01579200 | A0A3S3NAZ6 | A0A3S3PAV2 | DNA repair endonuclease UVH1. | ATP-dependent DNA helicase mph1 isoform X1. | 0.972 |
CKAN_00448200 | CKAN_01619500 | A0A3S3NAZ6 | A0A443P8Z6 | DNA repair endonuclease UVH1. | Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. | 0.894 |
CKAN_00448200 | CKAN_01880500 | A0A3S3NAZ6 | A0A3S3NZC8 | DNA repair endonuclease UVH1. | DNA replication ATP-dependent helicase/nuclease DNA2. | 0.830 |
CKAN_00448200 | CKAN_02092300 | A0A3S3NAZ6 | A0A3S3MXD2 | DNA repair endonuclease UVH1. | Serine/threonine-protein kinase ATR isoform X1. | 0.945 |
CKAN_00448500 | CKAN_00367800 | A0A443NC47 | A0A443N9V0 | ERCC4 domain-containing protein. | Replication protein A subunit B. | 0.918 |
CKAN_00448500 | CKAN_00596000 | A0A443NC47 | A0A3S3MPR0 | ERCC4 domain-containing protein. | Tudor domain-containing protein 3. | 0.989 |
CKAN_00448500 | CKAN_00878700 | A0A443NC47 | A0A443NNQ7 | ERCC4 domain-containing protein. | ATP-dependent DNA helicase RecQ-like protein. | 0.960 |
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