STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01635200GTP-binding family protein. (251 aa)    
Predicted Functional Partners:
CKAN_00129500
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.922
CKAN_02078100
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.919
CKAN_01085700
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.916
CKAN_01592600
Trafficking protein particle complex subunit 6B-like protein isoform X2.
    
 0.914
CKAN_02071600
Trafficking protein particle complex subunit 2-like protein.
    
 0.914
CKAN_02272100
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. BET3 subfamily.
    
 0.914
CKAN_00519200
Vesicle tethering protein Uso1/P115-like protein.
   
 0.872
CKAN_00245400
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.848
CKAN_01271500
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.848
CKAN_01190800
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.848
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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