STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01762200Ribose 5-phosphate isomerase. (345 aa)    
Predicted Functional Partners:
CKAN_00689300
Ribulose-phosphate 3-epimerase-like protein.
  
 0.958
CKAN_00933400
Transketolase, chloroplastic.
   
 0.938
CKAN_02079300
Transketolase, chloroplastic-like protein.
   
 0.938
CKAN_02523200
Phosphoglucomutase, chloroplastic.
  
 
 0.916
CKAN_00353300
6-phosphogluconate dehydrogenase, decarboxylating; Belongs to the 6-phosphogluconate dehydrogenase family.
   
 
 0.914
CKAN_01564600
Ribose-phosphate pyrophosphokinase 1 isoform X2.
  
 
 0.912
CKAN_00095200
Ribose-phosphate pyrophosphokinase 1 isoform X1.
  
 
 0.911
CKAN_01058400
Putative ribose-5-phosphate isomerase 4, chloroplastic.
  
  
0.899
CKAN_01811800
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
    
 0.897
CKAN_00341900
Alpha-D-phosphohexomutase superfamily; Belongs to the phosphohexose mutase family.
  
 
 0.892
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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