STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_017882003-ketoacyl-CoA synthase. (518 aa)    
Predicted Functional Partners:
CKAN_00031800
Very-long-chain 3-oxoacyl-CoA reductase 1-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.857
CKAN_00137300
Integrator complex subunit 3 isoform X1.
   
 0.836
CKAN_01581500
Uncharacterized protein.
   
 0.816
CKAN_01797800
RNA polymerase II-associated protein 3.
   
 0.812
CKAN_00241500
Methylmalonate-semialdehyde dehydrogenase.
   
 0.777
CKAN_01074800
Protein SIEL isoform X1.
   
 0.764
CKAN_00344400
Cleavage and polyadenylation specificity factor subunit 3-II.
    
 0.725
CKAN_00437700
Beta-Casp domain-containing protein.
    
 0.694
CKAN_01958700
DNA-directed RNA polymerase II subunit 4.
   
  0.685
CKAN_01175400
DNA-directed RNA polymerases II, IV and V subunit 6A isoform X1.
    
  0.654
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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