STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01792000E3 ubiquitin protein ligase DRIP2. (429 aa)    
Predicted Functional Partners:
CKAN_00120200
Putative E3 ubiquitin-protein ligase RING1a isoform X2.
  
 
0.986
CKAN_02272400
Polycomb group protein FIE2.
    
 0.858
CKAN_00046700
Dual specificity phosphatase Cdc25.
    
 0.811
CKAN_01175100
Histone-lysine N-methyltransferase CLF-like protein isoform X1.
    
 0.803
CKAN_02455200
SANT/Myb domain-containing protein.
    
 0.803
CKAN_01563000
Polycomb group protein EMBRYONIC FLOWER 2 isoform X2.
   
 0.770
CKAN_01882700
Polycomb group protein EMBRYONIC FLOWER 2-like protein isoform X4.
   
 0.770
CKAN_01409100
Transcription factor E2FA-like protein.
    
 0.758
CKAN_01481700
Transcription factor E2FB-like protein isoform X2.
    
 0.758
CKAN_02651700
Transcription factor E2FA-like protein.
    
 0.758
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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