STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01815900Phospho-N-acetylmuramoyl-pentapeptide-transferase isoform X1. (509 aa)    
Predicted Functional Partners:
CKAN_00971400
4-coumarate-CoA ligase.
   
  0.838
CKAN_01623400
4-coumarate-CoA ligase.
   
  0.838
CKAN_00714100
Nitrate reductase NADH-like protein.
   
 0.830
CKAN_01923800
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
   
 0.830
CKAN_02206300
Nitrate reductase 2.
   
 0.830
CKAN_02206400
Nitrate reductase NADH-like protein.
   
 0.830
CKAN_00910900
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
    
   0.829
CKAN_01797500
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
    
   0.829
CKAN_00759100
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
    
   0.829
CKAN_01975900
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
    
   0.829
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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