STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01865700Putative aminotransferase TAT2 isoform X2. (254 aa)    
Predicted Functional Partners:
CKAN_01820700
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.
  
 
 0.939
CKAN_02561100
Putative bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1.
  
 
 0.939
CKAN_01765600
4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.908
CKAN_01384100
Protein PHYLLO, chloroplastic isoform X1.
   
 0.902
CKAN_00584000
Aspartate aminotransferase.
   
 0.858
CKAN_02495100
Histidinol-phosphate aminotransferase, chloroplastic isoform X1.
  
 
 0.856
CKAN_02361600
Ornithine/DAP/Arg decarboxylase.
  
 
 0.837
CKAN_00783500
Ornithine/DAP/Arg decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.837
CKAN_00267300
Amine oxidase.
     
 0.832
CKAN_01661000
Methionine gamma-lyase.
  
 
 0.832
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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