STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01872000F-box/kelch-repeat protein SKIP25-like protein. (382 aa)    
Predicted Functional Partners:
CKAN_00054900
NEDD8-conjugating enzyme Ubc12 isoform X2; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.551
CKAN_00258900
NEDD8-conjugating enzyme Ubc12 isoform X2; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.551
CKAN_02490700
NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1/NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily.
     
 0.548
CKAN_01012600
Putative esterase D14L.
      
 0.509
CKAN_00806400
RING-box protein 1a.
    
 0.470
CKAN_02523800
RING-box protein 1a-like protein.
    
 0.470
CKAN_01828200
F-box/LRR-repeat MAX2 A.
      
 0.444
CKAN_02050400
Protein SUPPRESSOR OF MAX2 1-like protein.
      
 0.438
CKAN_00598600
Strigolactone esterase D14-like protein.
      
 0.428
CKAN_00690600
Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.
    
  0.428
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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