STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01932800Protein translocase subunit SecA. (928 aa)    
Predicted Functional Partners:
CKAN_00102800
Tetratricopeptide repeat-containing domain-containing protein.
    
 0.902
CKAN_01090800
RNA polymerase II accessory factor.
    
 0.865
CKAN_01680800
Protein PAF1.
   
 0.849
CKAN_00461200
DExH-box ATP-dependent RNA helicase DExH11.
    
 0.845
CKAN_01211800
DExH-box ATP-dependent RNA helicase DExH15 chloroplastic.
    
 0.845
CKAN_00569300
Protein LEO1.
    
 0.792
CKAN_01125500
Tetratricopeptide TPR-1.
    
 0.774
CKAN_02198600
Protein translocase subunit SecA; Belongs to the SecA family.
 
  
 0.741
CKAN_01779500
DNA damage-binding protein 1.
    
 0.709
CKAN_00112600
DExH-box ATP-dependent RNA helicase DExH9.
    
 0.698
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.