STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_019361002-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic. (310 aa)    
Predicted Functional Partners:
CKAN_02325900
1-deoxy-D-xylulose 5-phosphate reductoisomerase.
  
 0.973
CKAN_00840800
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase.
  
 
 0.962
CKAN_00840600
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase.
  
 
 0.962
CKAN_00341700
DNA repair protein RAD4 isoform X1.
    
 0.937
CKAN_00102600
Kinesin-like protein KIN-14E isoform X1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.911
CKAN_02028000
RNA polymerase II C-terminal domain phosphatase-like; This promotes the activity of RNA polymerase II.
    
  0.846
CKAN_01598200
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
   
 
 0.839
CKAN_00656700
Enhanced ethylene response protein 5.
    
 
 0.808
CKAN_00449500
SAC3 family protein C.
    
 
 0.807
CKAN_00508100
SAC3/GANP/Nin1/mts3/eIF-3 p25.
    
 
 0.807
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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