STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01941300DNA gyrase subunit A, chloroplastic/mitochondrial isoform X1. (927 aa)    
Predicted Functional Partners:
CKAN_02317300
DNA topoisomerase 1-like protein isoform X1.
   
 
 0.921
CKAN_00765700
Structural maintenance of chromosomes protein 2-1-like protein.
   
 
 0.902
CKAN_01559700
Structural maintenance of chromosomes protein 6B-like protein isoform X1.
   
 
 0.877
CKAN_00845300
Ubiquitin-conjugating enzyme E2 19; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.860
CKAN_00303500
Ubiquitin-conjugating enzyme E2 20-like protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.860
CKAN_00303600
Ubiquitin-conjugating enzyme E2 20; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.860
CKAN_02075600
Structural maintenance of chromosomes protein.
   
 
 0.828
CKAN_00686300
Structural maintenance of chromosomes protein.
   
 
 0.828
CKAN_01528000
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner.
 
 
 0.826
CKAN_01174100
SUMO-conjugating enzyme SCE1; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.826
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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