STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01959700UBX domain-containing protein. (503 aa)    
Predicted Functional Partners:
CKAN_02467800
NPL4-like protein 2.
    
 0.984
CKAN_00650500
Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.
    
  0.957
CKAN_00434500
Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.
    
  0.957
CKAN_02475400
Putative ubiquitin fusion degradaton protein.
    
 0.949
CKAN_02148900
Ubiquitin fusion degradation protein 1.
    
 0.949
CKAN_01498100
Ubiquitin fusion degradation protein 1 isoform X1.
    
 0.949
CKAN_01806800
Ubiquitin fusion degradation protein 1.
    
 0.949
CKAN_00589800
Protein CbbX.
    
 0.932
CKAN_00125200
AAA domain-containing protein/CDC48_N domain-containing protein/CDC48_2 domain-containing protein.
    
 0.932
CKAN_02333900
AAA domain-containing protein/CDC48_N domain-containing protein/CDC48_2 domain-containing protein.
    
 0.932
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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