STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01967300Regulator of nonsense transcripts UPF2 isoform X2. (227 aa)    
Predicted Functional Partners:
CKAN_01351600
Regulator of nonsense transcripts UPF3 isoform X1.
   
 0.993
CKAN_00964800
Regulator of nonsense transcripts 1.
   
 0.993
CKAN_01630000
Regulator of nonsense transcripts 1.
   
 0.993
CKAN_01942700
Regulator of nonsense transcripts UPF3 isoform X1.
   
 0.993
CKAN_00307800
RNA-binding protein 8A.
    
 0.992
CKAN_01500800
Serine/arginine repetitive matrix protein 1-like protein.
    
 
 0.961
CKAN_01878400
Polyadenylate-binding protein 2-like protein isoform X1.
    
 0.955
CKAN_00786700
Polyadenylate-binding protein 2-like protein isoform X1.
    
 0.955
CKAN_01901000
Polyadenylate-binding protein 2-like protein isoform X2.
    
 0.955
CKAN_00252700
Phosphatidylinositol 3-/4-kinase; Belongs to the PI3/PI4-kinase family.
   
 
 0.890
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.