STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01975800F-box/LRR-repeat protein 10. (644 aa)    
Predicted Functional Partners:
CKAN_00602900
Aspartate/glutamate/uridylate kinase.
   
  0.851
CKAN_00909800
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
     
 0.844
CKAN_01123500
tRNA dimethylallyltransferase 2 isoform X1; Belongs to the IPP transferase family.
     
 0.712
CKAN_00616700
Squalene/phytoene synthase.
   
 
  0.711
CKAN_01137200
Squalene synthase.
   
 
  0.711
CKAN_02123300
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 0.634
CKAN_00806400
RING-box protein 1a.
    
 0.621
CKAN_02523800
RING-box protein 1a-like protein.
    
 0.621
CKAN_01937000
Cullin-associated NEDD8-dissociated protein 1 isoform X1.
    
 0.582
CKAN_00692500
Cullin-3A-like protein isoform X1; Belongs to the cullin family.
    
 0.540
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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