CKAN_02007800 protein (Cinnamomum micranthum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CKAN_02007800

5' exonuclease Apollo. (120 aa)

Predicted Functional Partners:

CKAN_01469500

0.999

CKAN_01074800

0.921

CKAN_01834900

0.911

CKAN_00131900

0.909

CKAN_02413600

0.909

CKAN_00237400

0.903

CKAN_02495000

0.903

CKAN_00158100

0.901

CKAN_00934800

0.898

CKAN_01651100

0.898

Your Current Organism:

Cinnamomum micranthum

NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CKAN_00131900	CKAN_01834900	A0A3S3PUH4	A0A3S3NK88	SAP domain-containing protein.	ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase.	0.999
CKAN_00131900	CKAN_02007800	A0A3S3PUH4	A0A443PJK8	SAP domain-containing protein.	5' exonuclease Apollo.	0.909
CKAN_00158100	CKAN_00237400	A0A3S3PTP0	A0A443N6D1	Zinc finger CCCH domain-containing protein 7.	Uncharacterized protein.	0.976
CKAN_00158100	CKAN_00934800	A0A3S3PTP0	A0A3S3Q8K0	Zinc finger CCCH domain-containing protein 7.	Cleavage and polyadenylation specificity factor subunit 1.	0.973
CKAN_00158100	CKAN_01074800	A0A3S3PTP0	A0A443NU49	Zinc finger CCCH domain-containing protein 7.	Protein SIEL isoform X1.	0.741
CKAN_00158100	CKAN_01469500	A0A3S3PTP0	A0A443P4Y7	Zinc finger CCCH domain-containing protein 7.	30-cleavage and polyadenylation specificity factor 30.	0.958
CKAN_00158100	CKAN_01651100	A0A3S3PTP0	A0A443P9Z5	Zinc finger CCCH domain-containing protein 7.	Protein TPX2.	0.973
CKAN_00158100	CKAN_02007800	A0A3S3PTP0	A0A443PJK8	Zinc finger CCCH domain-containing protein 7.	5' exonuclease Apollo.	0.901
CKAN_00158100	CKAN_02413600	A0A3S3PTP0	A0A443PVM7	Zinc finger CCCH domain-containing protein 7.	Cleavage stimulation factor subunit 50.	0.984
CKAN_00158100	CKAN_02495000	A0A3S3PTP0	A0A443PXV9	Zinc finger CCCH domain-containing protein 7.	Symplekin isoform X1.	0.976
CKAN_00237400	CKAN_00158100	A0A443N6D1	A0A3S3PTP0	Uncharacterized protein.	Zinc finger CCCH domain-containing protein 7.	0.976
CKAN_00237400	CKAN_00934800	A0A443N6D1	A0A3S3Q8K0	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 1.	0.964
CKAN_00237400	CKAN_01074800	A0A443N6D1	A0A443NU49	Uncharacterized protein.	Protein SIEL isoform X1.	0.501
CKAN_00237400	CKAN_01469500	A0A443N6D1	A0A443P4Y7	Uncharacterized protein.	30-cleavage and polyadenylation specificity factor 30.	0.986
CKAN_00237400	CKAN_01651100	A0A443N6D1	A0A443P9Z5	Uncharacterized protein.	Protein TPX2.	0.960
CKAN_00237400	CKAN_02007800	A0A443N6D1	A0A443PJK8	Uncharacterized protein.	5' exonuclease Apollo.	0.903
CKAN_00237400	CKAN_02413600	A0A443N6D1	A0A443PVM7	Uncharacterized protein.	Cleavage stimulation factor subunit 50.	0.833
CKAN_00237400	CKAN_02495000	A0A443N6D1	A0A443PXV9	Uncharacterized protein.	Symplekin isoform X1.	0.883
CKAN_00934800	CKAN_00158100	A0A3S3Q8K0	A0A3S3PTP0	Cleavage and polyadenylation specificity factor subunit 1.	Zinc finger CCCH domain-containing protein 7.	0.973
CKAN_00934800	CKAN_00237400	A0A3S3Q8K0	A0A443N6D1	Cleavage and polyadenylation specificity factor subunit 1.	Uncharacterized protein.	0.964

page 1 of 4

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About