STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02069000Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (300 aa)    
Predicted Functional Partners:
CKAN_01566800
60S ribosomal protein L37a-2.
   
 
 0.571
CKAN_02524900
60S ribosomal protein L27a-2; Belongs to the universal ribosomal protein uL15 family.
   
   0.566
CKAN_00478100
Ribosomal protein S10.
   
   0.548
CKAN_00982500
Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
     
 0.499
CKAN_00902700
Succinate--CoA ligase ADP-forming subunit beta, mitochondrial.
     
 0.499
CKAN_00079000
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.493
CKAN_01833500
40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
   
   0.484
CKAN_01648700
40S ribosomal protein S13-like protein isoform X1; Belongs to the universal ribosomal protein uS15 family.
   
   0.484
CKAN_01068100
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
   
 
 0.481
CKAN_01450500
Ribosomal protein S12/S23.
   
 
 0.481
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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