STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02075100Histidine--tRNA ligase, chloroplastic/mitochondrial isoform X1. (154 aa)    
Predicted Functional Partners:
CKAN_01677100
ATP phosphoribosyltransferase HisG.
  
 0.975
CKAN_00636700
Eukaryotic translation initiation factor 2 subunit alpha.
   
 0.960
CKAN_01161900
Eukaryotic translation initiation factor 2 subunit alpha.
   
 0.960
CKAN_00877700
Protein kinase domain-containing protein.
     
 0.902
CKAN_00230400
Aspartate--tRNA ligase, chloroplastic/mitochondrial.
  
  
 0.884
CKAN_00230200
Aspartate--tRNA ligase, chloroplastic/mitochondrial.
  
  
 0.884
CKAN_00755900
WD40 repeat.
    
 0.870
CKAN_01072000
WD40 repeat.
     
 0.833
CKAN_01388900
Histidine biosynthesis bifunctional protein hisIE, chloroplastic.
    
 0.811
CKAN_02202300
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.811
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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