STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02076700Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (741 aa)    
Predicted Functional Partners:
CKAN_01605800
DNA repair protein RAD50.
  
 0.999
CKAN_00878700
ATP-dependent DNA helicase RecQ-like protein.
  
 0.997
CKAN_02182500
Nijmegen breakage syndrome 1 protein isoform X1.
    
 0.996
CKAN_01450700
Phosphatidylinositol 3-/4-kinase; Belongs to the PI3/PI4-kinase family.
   
 0.993
CKAN_00131900
SAP domain-containing protein.
   
 0.983
CKAN_01834900
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase.
   
 0.980
CKAN_02092300
Serine/threonine-protein kinase ATR isoform X1.
   
 0.978
CKAN_01464900
GPI mannosyltransferase 1; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis. Transfers the first alpha-1,4-mannose to GlcN- acyl-PI during GPI precursor assembly.
    
  0.977
CKAN_01443100
Exonuclease 1 isoform X1.
  
 0.973
CKAN_01517400
Exonuclease 1 isoform X1.
  
 0.973
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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