Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CKAN_00578400 | CKAN_01212700 | A0A3S3M588 | A0A3S3N9N6 | 50S ribosomal protein L25-like protein. | Ribosomal protein S4/S9. | 0.991 |
CKAN_00578400 | CKAN_01282300 | A0A3S3M588 | A0A443NZU7 | 50S ribosomal protein L25-like protein. | 40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family. | 0.991 |
CKAN_00578400 | CKAN_01282400 | A0A3S3M588 | A0A443NZS7 | 50S ribosomal protein L25-like protein. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.980 |
CKAN_00578400 | CKAN_01295200 | A0A3S3M588 | A0A443P0A0 | 50S ribosomal protein L25-like protein. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.980 |
CKAN_00578400 | CKAN_01924100 | A0A3S3M588 | A0A3S3PGK8 | 50S ribosomal protein L25-like protein. | 30S ribosomal protein S13, chloroplastic-like protein; Belongs to the universal ribosomal protein uS13 family. | 0.966 |
CKAN_00578400 | CKAN_02077400 | A0A3S3M588 | A0A443PLH7 | 50S ribosomal protein L25-like protein. | RNA polymerase sigma factor sigF, chloroplastic isoform X1. | 0.839 |
CKAN_00578400 | CKAN_02151200 | A0A3S3M588 | A0A443PNJ6 | 50S ribosomal protein L25-like protein. | LisH domain-containing protein ARMC9-like protein. | 0.996 |
CKAN_00578400 | CKAN_02266600 | A0A3S3M588 | A0A443PRL9 | 50S ribosomal protein L25-like protein. | Ribosomal protein L6; Belongs to the universal ribosomal protein uL6 family. | 0.959 |
CKAN_00578400 | CKAN_02780000 | A0A3S3M588 | A0A443Q5H7 | 50S ribosomal protein L25-like protein. | ATP synthase F0, A subunit; Belongs to the universal ribosomal protein uS2 family. | 0.976 |
CKAN_01212700 | CKAN_00578400 | A0A3S3N9N6 | A0A3S3M588 | Ribosomal protein S4/S9. | 50S ribosomal protein L25-like protein. | 0.991 |
CKAN_01212700 | CKAN_01282300 | A0A3S3N9N6 | A0A443NZU7 | Ribosomal protein S4/S9. | 40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family. | 0.982 |
CKAN_01212700 | CKAN_01282400 | A0A3S3N9N6 | A0A443NZS7 | Ribosomal protein S4/S9. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.991 |
CKAN_01212700 | CKAN_01295200 | A0A3S3N9N6 | A0A443P0A0 | Ribosomal protein S4/S9. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.991 |
CKAN_01212700 | CKAN_01760500 | A0A3S3N9N6 | A0A3S3MYC8 | Ribosomal protein S4/S9. | 50S ribosomal protein L25. | 0.991 |
CKAN_01212700 | CKAN_01924100 | A0A3S3N9N6 | A0A3S3PGK8 | Ribosomal protein S4/S9. | 30S ribosomal protein S13, chloroplastic-like protein; Belongs to the universal ribosomal protein uS13 family. | 0.994 |
CKAN_01212700 | CKAN_02077400 | A0A3S3N9N6 | A0A443PLH7 | Ribosomal protein S4/S9. | RNA polymerase sigma factor sigF, chloroplastic isoform X1. | 0.834 |
CKAN_01212700 | CKAN_02151200 | A0A3S3N9N6 | A0A443PNJ6 | Ribosomal protein S4/S9. | LisH domain-containing protein ARMC9-like protein. | 0.997 |
CKAN_01212700 | CKAN_02266600 | A0A3S3N9N6 | A0A443PRL9 | Ribosomal protein S4/S9. | Ribosomal protein L6; Belongs to the universal ribosomal protein uL6 family. | 0.976 |
CKAN_01212700 | CKAN_02780000 | A0A3S3N9N6 | A0A443Q5H7 | Ribosomal protein S4/S9. | ATP synthase F0, A subunit; Belongs to the universal ribosomal protein uS2 family. | 0.991 |
CKAN_01282300 | CKAN_00578400 | A0A443NZU7 | A0A3S3M588 | 40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family. | 50S ribosomal protein L25-like protein. | 0.991 |
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