STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02123500Protein STABILIZED1-like protein. (495 aa)    
Predicted Functional Partners:
CKAN_01371500
U5 small nuclear ribonucleoprotein component CLO.
  
 0.971
CKAN_00408300
Pre-mRNA-processing-splicing factor 8A.
   
 0.965
CKAN_01337700
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
   
 0.960
CKAN_01201200
DEAD domain-containing protein/Helicase_C domain-containing protein.
   
 0.941
CKAN_00433800
DEAD-box ATP-dependent RNA helicase 21.
   
 0.941
CKAN_01005000
DEAD-box ATP-dependent RNA helicase 22 isoform X3.
   
 0.941
CKAN_01205500
Nop domain-containing protein.
   
 0.940
CKAN_02342800
Putative small nuclear ribonucleoprotein F.
   
  0.936
CKAN_00282700
Small nuclear ribonucleoprotein-associated protein B.
    
 0.933
CKAN_02615700
U5 small nuclear ribonucleoprotein.
   
 0.930
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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