STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02131100UPF0503 protein, chloroplastic-like protein. (791 aa)    
Predicted Functional Partners:
CKAN_01924200
Patatin; Lipolytic acyl hydrolase (LAH). Belongs to the patatin family.
     
 0.662
CKAN_01787400
Beta-carotene isomerase D27, chloroplastic.
     
 0.631
CKAN_00102600
Kinesin-like protein KIN-14E isoform X1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.578
CKAN_01864900
Protein LOL2-like protein.
   
 
  0.562
CKAN_02334500
Protein enabled.
     
 0.514
CKAN_00616700
Squalene/phytoene synthase.
     
 0.435
CKAN_01062500
Phytoene synthase 2, chloroplastic-like protein.
     
 0.435
CKAN_01137200
Squalene synthase.
     
 0.435
CKAN_01343000
Phytoene synthase 2, chloroplastic.
     
 0.435
CKAN_02212800
Phytoene synthase 2, chloroplastic.
     
 0.435
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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