STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02150600U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; Belongs to the methyltransferase superfamily. METTL16/RlmF family. (501 aa)    
Predicted Functional Partners:
CKAN_02085700
Methyltransferase-like protein 1; Belongs to the MT-A70-like family.
   
  
 0.606
CKAN_01296900
Protein virilizer.
    
 
 0.579
CKAN_01845500
N6-adenosine-methyltransferase MT-A70-like protein; Belongs to the MT-A70-like family.
   
  
 0.573
CKAN_01268500
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
   
  
 0.550
CKAN_00173600
Methyltransferase-like protein 5.
      
 0.522
CKAN_01945200
E3 ubiquitin-protein ligase Hakai.
      
 0.518
CKAN_00258600
Methyltransferase-like protein 2 isoform X2; Belongs to the MT-A70-like family.
      
 0.515
CKAN_01500700
AIR synthase related protein.
      
 0.503
CKAN_02072900
Ribosomal RNA small subunit methyltransferase H.
      
 0.497
CKAN_02416200
Protein-lysine N-methyltransferase CKAN_02416200; S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha. Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM4 family.
      
 0.438
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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