STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02177000Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family. (519 aa)    
Predicted Functional Partners:
CKAN_02456500
Ribonuclease P/MRP.
   
 
 0.451
CKAN_01089200
TATA-box-binding protein.
   
  
 0.449
CKAN_00901200
TATA-box-binding protein.
   
  
 0.449
CKAN_00855000
Violaxanthin de-epoxidase, chloroplastic isoform X1; Belongs to the calycin superfamily. Lipocalin family.
   
    0.448
CKAN_00616700
Squalene/phytoene synthase.
   
 
 0.425
CKAN_01062500
Phytoene synthase 2, chloroplastic-like protein.
   
 
 0.425
CKAN_01137200
Squalene synthase.
   
 
 0.425
CKAN_01343000
Phytoene synthase 2, chloroplastic.
   
 
 0.425
CKAN_02212800
Phytoene synthase 2, chloroplastic.
   
 
 0.425
CKAN_00533700
Uncharacterized protein.
   
 
 0.417
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.