STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02180000Pumilio RNA-binding repeat. (802 aa)    
Predicted Functional Partners:
CKAN_00035100
Bystin.
   
 
 0.987
CKAN_00226400
DEAD-box ATP-dependent RNA helicase 16.
   
 
 0.983
CKAN_00511900
Something about silencing protein 10.
   
   0.981
CKAN_02444100
Putative nucleolar protein 5-1.
   
   0.976
CKAN_00645200
U3 small nucleolar RNA-associated protein 4.
   
 
 0.972
CKAN_02345700
Peter Pan-like protein isoform X1.
   
    0.968
CKAN_02530500
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
   0.959
CKAN_01562200
Protein AATF isoform X1.
   
 
 0.957
CKAN_01769000
RNA recognition motif domain-containing protein.
   
 
 0.957
CKAN_01903100
RNA-binding protein CP33, chloroplastic.
   
 
 0.957
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.