STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02249700LL-diaminopimelate aminotransferase, chloroplastic isoform X2. (459 aa)    
Predicted Functional Partners:
CKAN_01820700
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.
  
 
 0.919
CKAN_02561100
Putative bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1.
  
 
 0.919
CKAN_01384100
Protein PHYLLO, chloroplastic isoform X1.
   
 0.902
CKAN_00527400
Diaminopimelate epimerase, chloroplastic.
  
 0.897
CKAN_02361600
Ornithine/DAP/Arg decarboxylase.
  
 
 0.838
CKAN_01585800
Aspartate/glutamate/uridylate kinase.
  
 0.815
CKAN_02228200
Aminotransferase ALD1-like protein.
  
  
 
0.813
CKAN_00783500
Ornithine/DAP/Arg decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.812
CKAN_00199100
Aspartate/glutamate/uridylate kinase.
  
 0.786
CKAN_01272400
Aspartate/glutamate/uridylate kinase.
  
 0.786
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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