STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02258700Putative deoxyribonuclease TATDN1 isoform X1. (286 aa)    
Predicted Functional Partners:
CKAN_02319700
Sec-independent protein translocase protein TATC, chloroplastic.
     
 0.456
CKAN_01689000
Sec-independent protein translocase protein TATA, chloroplastic.
     
 0.453
CKAN_00318500
Guanylate kinase 2, chloroplastic/mitochondrial.
  
  
 0.418
CKAN_01155600
Guanylate kinase 2-like protein.
  
  
 0.418
CKAN_00216200
Primosome PriB/single-strand DNA-binding.
  
    0.406
CKAN_00962100
Protein OSB2, chloroplastic-like protein.
  
    0.406
CKAN_02327400
Single-stranded DNA-binding protein, mitochondrial.
  
    0.406
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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