STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02282500Dehydrodolichyl diphosphate synthase complex subunit NUS1. (275 aa)    
Predicted Functional Partners:
CKAN_00704100
Alkyl transferase; Belongs to the UPP synthase family.
   
 0.971
CKAN_01890200
Alkyl transferase; Belongs to the UPP synthase family.
   
 0.971
CKAN_00703700
Dirigent protein; Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.
   
 0.949
CKAN_00909800
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
     
 0.889
CKAN_01230400
Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic-like protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.876
CKAN_00616700
Squalene/phytoene synthase.
   
 
 0.864
CKAN_01137200
Squalene synthase.
   
 
 0.864
CKAN_01262200
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha.
     
 0.860
CKAN_00685400
UPF0047 protein YjbQ.
    
  0.856
CKAN_02433600
Fanesyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family.
  
 
 0.829
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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