STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_0238730050S ribosomal protein L34, chloroplastic. (144 aa)    
Predicted Functional Partners:
CKAN_01024100
50S ribosomal protein L4, chloroplastic-like protein.
   
   0.840
CKAN_01924100
30S ribosomal protein S13, chloroplastic-like protein; Belongs to the universal ribosomal protein uS13 family.
   
   0.828
CKAN_01923900
30S ribosomal protein S13, chloroplastic.
   
   0.811
CKAN_01964200
30S ribosomal protein S31, chloroplastic.
   
   0.809
CKAN_01964500
30S ribosomal protein S31, chloroplastic.
   
   0.809
CKAN_01534900
Ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
   
   0.789
CKAN_02043500
50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
   
   0.789
CKAN_01255100
50S ribosomal protein L18, chloroplastic.
   
   0.789
CKAN_01416100
30S ribosomal protein S17, chloroplastic; Belongs to the universal ribosomal protein uS17 family.
   
   0.788
CKAN_01819000
30S ribosomal protein S20, chloroplastic.
   
   0.788
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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