STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02395400NADH dehydrogenase ubiquinone iron-sulfur protein 5-B. (85 aa)    
Predicted Functional Partners:
CKAN_01542300
Serine/arginine-rich splicing factor SR34A isoform X1.
   
 0.952
CKAN_02395600
RNA recognition motif domain-containing protein.
   
 0.952
CKAN_02734900
NADH:ubiquinone/plastoquinone oxidoreductase.
   
   0.893
CKAN_00612100
NADH-ubiquinone oxidoreductase subunit.
    
   0.891
CKAN_01963400
DNA polymerase delta small subunit isoform X1.
    
 0.882
CKAN_02200600
DNA polymerase.
   
 0.850
CKAN_01806100
NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 13-B.
    
 
 0.830
CKAN_02342800
Putative small nuclear ribonucleoprotein F.
    
  0.829
CKAN_00834000
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
  0.801
CKAN_01342800
NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 7.
   
 
 0.797
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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