STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02397400Zinc finger protein. (944 aa)    
Predicted Functional Partners:
CKAN_01788100
Armadillo repeat-containing protein LFR.
   
 0.747
CKAN_00635600
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1.
   
 
 0.732
CKAN_01316800
Actin-related protein 4; Belongs to the actin family.
    
  0.717
CKAN_00108900
DnaJ domain-containing protein.
    
 0.613
CKAN_02372600
Chromatin structure-remodeling complex protein BSH.
    
 0.613
CKAN_00773900
Histone H3; Belongs to the histone H3 family.
    
 0.513
CKAN_01288100
WEB family protein, chloroplastic-like protein.
    
 0.513
CKAN_01157800
Histone H3.
    
 0.513
CKAN_00286400
COMM domain-containing protein 9-like protein.
    
 0.513
CKAN_00629200
Histone H3-like centromeric protein CSE4.
    
 0.513
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.