STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02405500Uncharacterized protein. (111 aa)    
Predicted Functional Partners:
CKAN_00521500
Peptide transporter family 1.
      
 0.502
CKAN_00509100
Mog1/PsbP, alpha/beta/alpha sandwich.
      
 0.493
CKAN_00311000
PsbP domain-containing protein 6, chloroplastic.
   
  
 0.444
CKAN_00098100
PsbP domain-containing protein 3, chloroplastic isoform X1.
      
 0.433
CKAN_02331800
Cysteine-rich receptor-like protein kinase 3.
      
 0.433
CKAN_00148800
PsbP domain-containing protein 5, chloroplastic isoform X1.
      
 0.431
CKAN_00051600
Protein DETOXIFICATION; Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family.
      
 0.420
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.