STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02414100Rhomboid-like protein 14, mitochondrial. (431 aa)    
Predicted Functional Partners:
CKAN_00729000
Sulfoquinovosyl transferase SQD2.
   
 
  0.578
CKAN_02151000
Phosphatidylinositol N-acetylglucosaminyltransferase subunit A.
   
 
  0.578
CKAN_02679000
Glycosyl transferase.
   
 
  0.578
CKAN_00589800
Protein CbbX.
    
 
 0.512
CKAN_00125200
AAA domain-containing protein/CDC48_N domain-containing protein/CDC48_2 domain-containing protein.
    
 
 0.512
CKAN_02333900
AAA domain-containing protein/CDC48_N domain-containing protein/CDC48_2 domain-containing protein.
    
 
 0.512
CKAN_00111400
Cell division control protein 48 B-like protein; Belongs to the AAA ATPase family.
    
 
 0.512
CKAN_02076400
Cell division cycle protein 48.
    
 
 0.512
CKAN_00518100
RHOMBOID-like protein.
      
 0.502
CKAN_01301100
RanBP2-type zinc finger-like protein.
      
 0.438
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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