STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02435000DNA-directed RNA polymerases IV and V subunit 4 isoform X1. (257 aa)    
Predicted Functional Partners:
CKAN_00205900
DNA-directed RNA polymerases II, IV and V subunit 11.
   
 0.994
CKAN_01175400
DNA-directed RNA polymerases II, IV and V subunit 6A isoform X1.
   
 0.994
CKAN_00237000
Protein EMBRYO DEFECTIVE 1674-like protein isoform X1.
   
 0.985
CKAN_01948900
DNA-directed RNA polymerases II, IV and V subunit 12.
   
 0.985
CKAN_00770600
General transcription factor IIF subunit 2.
   
 0.983
CKAN_02466900
Transcription initiation factor IIE subunit alpha.
    
 0.979
CKAN_02451500
Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2.
    
 0.979
CKAN_01124300
DNA-directed RNA polymerases IV and V subunit 5B-like protein.
   
 0.978
CKAN_00443500
DNA-directed RNA polymerases II and IV subunit 5A.
   
 0.977
CKAN_01745000
RNA polymerase; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.977
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.