STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02436800SART-1 family protein DOT2. (118 aa)    
Predicted Functional Partners:
CKAN_01205500
Nop domain-containing protein.
   
 0.970
CKAN_00408300
Pre-mRNA-processing-splicing factor 8A.
   
 0.959
CKAN_01371500
U5 small nuclear ribonucleoprotein component CLO.
    
 0.958
CKAN_01593100
Sm-like protein LSM7.
    
 0.947
CKAN_02538600
Ubiquitin carboxyl-terminal hydrolases family 2.
    
 0.945
CKAN_01412900
Sm-like protein LSM3A.
    
 0.944
CKAN_02287100
U6 snRNA-associated Sm-like protein LSm6.
    
 0.943
CKAN_02295900
Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.
    
 0.942
CKAN_01196100
Splicing factor 3B subunit 2-like protein.
   
 
 0.939
CKAN_00553800
RNA-binding protein 25 isoform X1.
   
 
 0.933
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.