STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02503100Cytochrome c biogenesis protein CCS1, chloroplastic isoform X1. (586 aa)    
Predicted Functional Partners:
CKAN_00734100
Cytochrome c-type biogenesis ccda-like chloroplastic protein.
  
  
 0.874
CKAN_02680000
Tetrapyrrole methylase; Belongs to the precorrin methyltransferase family.
  
    0.772
CKAN_00803100
Peroxiredoxin Q.
  
  
 0.676
CKAN_01193000
Thioredoxin-like protein HCF164, chloroplastic isoform X1.
  
  
 0.629
CKAN_02287200
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
  
 0.612
CKAN_01937900
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
  
  
 0.612
CKAN_00919200
Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1.
  
  
 0.610
CKAN_00273800
Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic.
   
  
 0.583
CKAN_02756600
Putative ATP synthase subunit.
  
  
 0.578
CKAN_02783900
ATP synthase F0, A subunit; Belongs to the universal ribosomal protein uS2 family.
  
  
 0.578
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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