CKAN_02507600 protein (Cinnamomum micranthum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CKAN_02507600

Putative S-adenosyl-L-methionine-dependent methyltransferase MAV_4444. (339 aa)

Predicted Functional Partners:

CKAN_01356100

0.931

CKAN_02515400

0.930

CKAN_02451500

0.910

CKAN_00461800

0.837

CKAN_00059200

0.836

CKAN_02769100

0.836

CKAN_00443500

0.825

CKAN_01124300

0.825

CKAN_02649100

0.825

CKAN_00205900

0.811

Your Current Organism:

Cinnamomum micranthum

NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CKAN_00059200	CKAN_00205900	A0A3S3MEL9	A0A3S3PUM6	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	DNA-directed RNA polymerases II, IV and V subunit 11.	0.994
CKAN_00059200	CKAN_00443500	A0A3S3MEL9	A0A3S3M2R3	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	DNA-directed RNA polymerases II and IV subunit 5A.	0.984
CKAN_00059200	CKAN_00461800	A0A3S3MEL9	A0A3S3MM66	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1.	0.794
CKAN_00059200	CKAN_01124300	A0A3S3MEL9	A0A3S3NM77	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	DNA-directed RNA polymerases IV and V subunit 5B-like protein.	0.984
CKAN_00059200	CKAN_01356100	A0A3S3MEL9	A0A3S3MJ87	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.875
CKAN_00059200	CKAN_02451500	A0A3S3MEL9	A0A443PWM8	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2.	0.976
CKAN_00059200	CKAN_02507600	A0A3S3MEL9	A0A443PY72	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	Putative S-adenosyl-L-methionine-dependent methyltransferase MAV_4444.	0.836
CKAN_00059200	CKAN_02515400	A0A3S3MEL9	A0A443PYG6	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.852
CKAN_00059200	CKAN_02649100	A0A3S3MEL9	A0A443Q229	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	DNA-directed RNA polymerases II and IV subunit 5A.	0.984
CKAN_00205900	CKAN_00059200	A0A3S3PUM6	A0A3S3MEL9	DNA-directed RNA polymerases II, IV and V subunit 11.	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	0.994
CKAN_00205900	CKAN_00443500	A0A3S3PUM6	A0A3S3M2R3	DNA-directed RNA polymerases II, IV and V subunit 11.	DNA-directed RNA polymerases II and IV subunit 5A.	0.991
CKAN_00205900	CKAN_00461800	A0A3S3PUM6	A0A3S3MM66	DNA-directed RNA polymerases II, IV and V subunit 11.	DNA-directed RNA polymerases I and III subunit RPAC1 isoform X1.	0.991
CKAN_00205900	CKAN_01124300	A0A3S3PUM6	A0A3S3NM77	DNA-directed RNA polymerases II, IV and V subunit 11.	DNA-directed RNA polymerases IV and V subunit 5B-like protein.	0.991
CKAN_00205900	CKAN_01356100	A0A3S3PUM6	A0A3S3MJ87	DNA-directed RNA polymerases II, IV and V subunit 11.	GPN-loop GTPase 2; Small GTPase required for proper localization of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.896
CKAN_00205900	CKAN_02451500	A0A3S3PUM6	A0A443PWM8	DNA-directed RNA polymerases II, IV and V subunit 11.	Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2.	0.987
CKAN_00205900	CKAN_02507600	A0A3S3PUM6	A0A443PY72	DNA-directed RNA polymerases II, IV and V subunit 11.	Putative S-adenosyl-L-methionine-dependent methyltransferase MAV_4444.	0.811
CKAN_00205900	CKAN_02515400	A0A3S3PUM6	A0A443PYG6	DNA-directed RNA polymerases II, IV and V subunit 11.	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.691
CKAN_00205900	CKAN_02649100	A0A3S3PUM6	A0A443Q229	DNA-directed RNA polymerases II, IV and V subunit 11.	DNA-directed RNA polymerases II and IV subunit 5A.	0.991
CKAN_00205900	CKAN_02769100	A0A3S3PUM6	A0A3S3NMM3	DNA-directed RNA polymerases II, IV and V subunit 11.	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	0.994
CKAN_00443500	CKAN_00059200	A0A3S3M2R3	A0A3S3MEL9	DNA-directed RNA polymerases II and IV subunit 5A.	DNA-directed RNA polymerases II, IV and V subunit 3-like protein.	0.984

page 1 of 5

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About