STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02537900Homogentisate solanesyltransferase, chloroplastic. (424 aa)    
Predicted Functional Partners:
CKAN_00239300
Geranylgeranyl diphosphate reductase, chloroplastic.
  
  
 0.928
CKAN_00827300
Aromatic-ring hydroxylase-like protein.
  
  
 0.928
CKAN_01765600
4-hydroxyphenylpyruvate dioxygenase.
     
 0.924
CKAN_00963800
2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic; Belongs to the class I-like SAM-binding methyltransferase superfamily. MPBQ/MBSQ MT family.
     
 0.923
CKAN_00367100
UbiA prenyltransferase family.
  
  
0.887
CKAN_01966200
TNF receptor-associated factor family protein isoform X2.
     
 0.878
CKAN_01525000
Polyprenyl synthetase.
     
 0.871
CKAN_01813100
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
     
 0.871
CKAN_00069200
Putative tocopherol cyclase, chloroplastic isoform X1.
    
 0.776
CKAN_01213300
NAD-dependent protein deacetylase SRT1.
    
 0.771
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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