STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02539400TOM1-like protein 2. (366 aa)    
Predicted Functional Partners:
CKAN_02513100
Beta galactosidase small chain/ domain-containing protein; Belongs to the glycosyl hydrolase 2 family.
     
 0.632
CKAN_01001300
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 
 0.543
CKAN_01829800
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 
 0.543
CKAN_00741300
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 
 0.543
CKAN_01623700
Rab GTPase-activating protein 1-like protein isoform X2.
    
  0.534
CKAN_02303200
Mannosylglycoprotein endo-beta-mannosidase.
     
 0.515
CKAN_01458000
Glutamyl/glutaminyl-tRNA synthetase.
     
 0.468
CKAN_02697700
HAT transposon superfamily isoform 2.
    
 
 0.453
CKAN_02203800
Semialdehyde dehydrogenase.
   
  
 0.426
CKAN_00982000
Phytochelatin synthase.
      
 0.424
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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