STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02540300Brix domain-containing protein. (273 aa)    
Predicted Functional Partners:
CKAN_01185600
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.992
CKAN_00444300
Putative ribosome biogenesis protein RLP24.
   
 
 0.990
CKAN_00031700
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 
 0.987
CKAN_02186900
Nucleolar complex protein 2.
   
 
 0.986
CKAN_00226400
DEAD-box ATP-dependent RNA helicase 16.
   
 
 0.984
CKAN_01195800
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 
 0.984
CKAN_02530500
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 
 0.984
CKAN_00992000
Ribosome biogenesis protein NOP53-like protein.
   
 
 0.983
CKAN_02350900
Pumilio RNA-binding repeat.
   
 
 0.983
CKAN_02074200
U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing.
   
 
 0.981
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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