STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02614300LETM1 and EF-hand domain-containing protein 1, mitochondrial-like protein. (759 aa)    
Predicted Functional Partners:
CKAN_01282300
40S ribosomal protein S9-2; Belongs to the universal ribosomal protein uS4 family.
    
 
 0.749
CKAN_00478100
Ribosomal protein S10.
    
   0.748
CKAN_01566800
60S ribosomal protein L37a-2.
    
   0.731
CKAN_01212700
Ribosomal protein S4/S9.
    
   0.717
CKAN_01636500
39S ribosomal protein L22, mitochondrial-like protein; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.716
CKAN_00287200
60S ribosomal protein L17-2; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.685
CKAN_00856200
60S ribosomal protein L17-2; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.685
CKAN_00014300
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
   
   0.666
CKAN_00663100
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
   
   0.666
CKAN_01833500
40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
   
   0.664
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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